opendvp.tl.stats_ttest

opendvp.tl.stats_ttest(adata, grouping, group1, group2, FDR_threshold=0.05)

Perform a t-test for all columns of an AnnData object between two groups.

Return type:

AnnData

Parameters

adataAnnData

AnnData object.

groupingstr

Column header in adata.obs, categorizing different groups to test.

group1str

Value in grouping column to be tested against.

group2str

Value in grouping column to be tested against group 1.

FDR_thresholdfloat, default 0.05

The threshold for the FDR correction.

Returns:

None

Results are saved to adata.var in-place.