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openDVP
API Reference
Input / Output
opendvp.io.adata_to_qupath
opendvp.io.import_thresholds
opendvp.io.quant_to_adata
opendvp.io.segmask_to_qupath
opendvp.io.DIANN_to_adata
opendvp.io.import_perseus
opendvp.io.export_adata
opendvp.io.export_figure
Metrics
opendvp.metrics.coefficient_of_variation
opendvp.metrics.nan_difference
Plotting
opendvp.plotting.dynamic_histogram
opendvp.plotting.plot_graph_network
opendvp.plotting.stacked_barplot
opendvp.plotting.abundance_histograms
opendvp.plotting.correlation_heatmap
opendvp.plotting.coefficient_of_variation
opendvp.plotting.density
opendvp.plotting.dual_axis_boxplots
opendvp.plotting.histogram_w_imputation
opendvp.plotting.pca_loadings
opendvp.plotting.pca
opendvp.plotting.rankplot
opendvp.plotting.upset
opendvp.plotting.volcano
Preprocessing
opendvp.pp.impute_marker_with_annotation
opendvp.pp.rescale
Tools
opendvp.tl.filter_adata_by_gates
opendvp.tl.filter_by_abs_value
opendvp.tl.filter_by_annotation
opendvp.tl.filter_by_ratio
opendvp.tl.filter_features_byNaNs
opendvp.tl.impute_gaussian
opendvp.tl.spatial_autocorrelation
opendvp.tl.spatial_hyperparameter_search
opendvp.tl.stats_anova
opendvp.tl.stats_average_samples
opendvp.tl.stats_bootstrap
opendvp.tl.stats_ttest
opendvp.tl.phenotype_cells
Utils
opendvp.utils.parse_color_for_qupath
Imaging
opendvp.imaging.mask_to_polygons
Tutorials will go here
Basics index.md
Test H1
.md
.pdf
Tutorials will go here
Contents
Basics
Tutorials will go here
#
Basics
#
Basics index.md
Contents
Basics