Index A | C | D | E | F | H | I | M | N | O | P | Q | R | S | U | V A abundance_histograms() (in module opendvp.plotting) adata_to_qupath() (in module opendvp.io) C coefficient_of_variation() (in module opendvp.metrics) (in module opendvp.plotting) correlation_heatmap() (in module opendvp.plotting) D density() (in module opendvp.plotting) DIANN_to_adata() (in module opendvp.io) dual_axis_boxplots() (in module opendvp.plotting) dynamic_histogram() (in module opendvp.plotting) E export_adata() (in module opendvp.io) export_figure() (in module opendvp.io) F filter_adata_by_gates() (in module opendvp.tl) filter_by_abs_value() (in module opendvp.tl) filter_by_annotation() (in module opendvp.tl) filter_by_ratio() (in module opendvp.tl) filter_features_byNaNs() (in module opendvp.tl) H histogram_w_imputation() (in module opendvp.plotting) I import_perseus() (in module opendvp.io) import_thresholds() (in module opendvp.io) impute_gaussian() (in module opendvp.tl) impute_marker_with_annotation() (in module opendvp.pp) M mask_to_polygons() (in module opendvp.imaging) module opendvp.imaging opendvp.io opendvp.metrics opendvp.plotting opendvp.pp opendvp.tl opendvp.utils N nan_difference() (in module opendvp.metrics) O opendvp.imaging module opendvp.io module opendvp.metrics module opendvp.plotting module opendvp.pp module opendvp.tl module opendvp.utils module P parse_color_for_qupath() (in module opendvp.utils) pca() (in module opendvp.plotting) pca_loadings() (in module opendvp.plotting) phenotype_cells() (in module opendvp.tl) plot_graph_network() (in module opendvp.plotting) Q quant_to_adata() (in module opendvp.io) R rankplot() (in module opendvp.plotting) rescale() (in module opendvp.pp) S segmask_to_qupath() (in module opendvp.io) spatial_autocorrelation() (in module opendvp.tl) spatial_hyperparameter_search() (in module opendvp.tl) stacked_barplot() (in module opendvp.plotting) stats_anova() (in module opendvp.tl) stats_average_samples() (in module opendvp.tl) stats_bootstrap() (in module opendvp.tl) stats_ttest() (in module opendvp.tl) U upset() (in module opendvp.plotting) V volcano() (in module opendvp.plotting)