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opendvp
API Reference
Input / Output
opendvp.io.adata_to_qupath
opendvp.io.adata_to_voronoi
opendvp.io.import_thresholds
opendvp.io.quant_to_adata
opendvp.io.segmask_to_qupath
opendvp.io.DIANN_to_adata
opendvp.io.import_perseus
opendvp.io.export_adata
opendvp.io.export_figure
Metrics
opendvp.metrics.coefficient_of_variation
opendvp.metrics.nan_difference
Plotting
opendvp.plotting.plot_graph_network
opendvp.plotting.stacked_barplot
opendvp.plotting.abundance_histograms
opendvp.plotting.correlation_heatmap
opendvp.plotting.coefficient_of_variation
opendvp.plotting.density
opendvp.plotting.dual_axis_boxplots
opendvp.plotting.imputation_qc
opendvp.plotting.pca_loadings
opendvp.plotting.rankplot
opendvp.plotting.upset
opendvp.plotting.volcano
Preprocessing
opendvp.pp.impute_marker_with_annotation
Tools
opendvp.tl.filter_by_abs_value
opendvp.tl.filter_by_annotation
opendvp.tl.filter_by_ratio
opendvp.tl.filter_features_byNaNs
opendvp.tl.impute_gaussian
opendvp.tl.spatial_autocorrelation
opendvp.tl.spatial_hyperparameter_search
opendvp.tl.stats_anova
opendvp.tl.stats_average_samples
opendvp.tl.stats_bootstrap
opendvp.tl.stats_ttest
Utils
opendvp.utils.parse_color_for_qupath
Imaging
opendvp.imaging.mask_to_polygons
Tutorials
T1: Image single-cell analysis
T2: Downstream Proteomics
T3: Proteomics Integration
openDVP the framework
Experimental
Imaging
Tissue and Slides
Computational
Install opendvp
Getting started with MCMICRO
Getting started with SOPA
Contribution Guide
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